Welcome!

Email: jjian [at] scripps [dot] edu

Hi there! I’m Jinglin Jian (简靖琳), a PhD student at The Scripps Research Institute by the beautiful ocean 🏖️ at San Diego, CA. I’m deeply grateful to be supported by the Kellogg Fellowship, a three-year endowed award generously funded by the Kellogg family and The ALSAM Foundation. I received my master degree from the School of Information Sciences at the University of Illinois at Urbana-Champaign, where I had the opportunity to work close with Professor Qingyun Wang, Professor Haohan Wang, and Professor Ge Liu. Previously, I studied at Beijing Normal University, with a dual B.Econ. degree in Economics from Peking University.

Publications and Conferences

CS582 ML for Bioinformatics Workshop
2024geocm

GeoCM: Exploring Consistency Models and EGNNs for Molecular 3D Structure Prediction

Ruibo Hou, Jinglin Jian, Dian Zhou, Ge Liu

Developed a self-supervised model based on the Equivariant Graph Neural Networks (EGNN) and Consistency Models (CM) to predict molecular 3D structures.

BigData 2024
2024multimodal

Patient Outcome Predictions via A Multimodal Lan- guage Model for Electronic Health Records

Zihan Li, Jinglin Jian, Chundian Li, Jinxia Yao, Jin Chen, Yang Zhang

Early prediction of mortality risk and hospital length of stay is critical. We propose a multimodal framework that integrates full-text clinical note embeddings and time-stamped physiological data to jointly model patient outcomes.

BigData 2024
2024aptamer

Big Data-Driven Computational Aptamer Design Framework via Parallel Monte Carlo Tree Search

Jinglin Jian, Zhiheng Jiao, Zihan Li, Jin Chen

Developed an enhanced parallel Monte Carlo Tree Search framework for designing aptamers with high-affinity and specificity for target proteins.

arXiv 2024
2024tais

Toward a Team of AI-made Scientists for Scientific Discovery from Gene Expression Data

Haoyang Liu, Yijiang Li, Jinglin Jian, Yuxuan Cheng, Jianrong Lu, Shuyi Guo, Jinglei Zhu, Mianchen Zhang, Miantong Zhang, Haohan Wang

ML can discover disease-predictive genes from gene expression data. We introduced the Team of AI-made Scientists (TAIS), a LLM-based framework for automatic streamlining ML analysis. TAIS consists of simulated roles, including a project manager, data engineer, and domain expert.

Selected Projects

Research Assistant
2020hypervideo

The Impact of Productive Failure on Learning Performance and Cognitive Load: Using Hypervideo to Facilitate Online Interactions

Xiaojie Niu, Jingjing Zhang, Kate M. Xu, Xuan Wang

Productive failure is an instructional approach that uses students’ cognitive conflicts to enhance their learning. This experimental study investigated the effect of productive failure in a hypervideo environment.

Bachelor’s Thesis
2021eduKG

Semi-automatic Knowledge Graph Construction

Jinglin Jian (Advisor: Prof. Qinhua Zheng)

An interactive system was designed and implemented, enabling domain experts to collaborate with AI models to create educational knowledge graphs (KG) from unstructured text (i.e. lecture transcripts).